[Misc] Auto reformat data/. (#5318)

* data

* lintrunner

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

python/dgl/data/csv_dataset.py

@@ -5,7 +5,7 @@ import numpy as np
 from .. import backend as F
 from ..base import DGLError
 from .dgl_dataset import DGLDataset
-from .utils import Subset, load_graphs, save_graphs
+from .utils import load_graphs, save_graphs, Subset
 
 
 class CSVDataset(DGLDataset):

python/dgl/data/csv_dataset_base.py

@@ -8,7 +8,7 @@ import pydantic as dt
 import yaml
 
 from .. import backend as F
-from ..base import DGLError, dgl_warning
+from ..base import dgl_warning, DGLError
 from ..convert import heterograph as dgl_heterograph
 
 

python/dgl/data/gindt.py

@@ -99,7 +99,6 @@ class GINDataset(DGLBuiltinDataset):
         verbose=False,
         transform=None,
     ):
-
         self._name = name  # MUTAG
         gin_url = "https://raw.githubusercontent.com/weihua916/powerful-gnns/master/dataset.zip"
         self.ds_name = "nig"

python/dgl/data/gnn_benchmark.py

 """GNN Benchmark datasets for node classification."""
-import scipy.sparse as sp
-import numpy as np
 import os
 
-from .dgl_dataset import DGLBuiltinDataset
-from .utils import save_graphs, load_graphs, _get_dgl_url, deprecate_property, deprecate_class
+import numpy as np
+import scipy.sparse as sp
+
+from .. import backend as F, transforms
 from ..convert import graph as dgl_graph
-from .. import backend as F
-from .. import transforms
 
-__all__ = ["AmazonCoBuyComputerDataset", "AmazonCoBuyPhotoDataset", "CoauthorPhysicsDataset", "CoauthorCSDataset",
-           "CoraFullDataset", "AmazonCoBuy", "Coauthor", "CoraFull"]
+from .dgl_dataset import DGLBuiltinDataset
+from .utils import (
+    _get_dgl_url,
+    deprecate_class,
+    deprecate_property,
+    load_graphs,
+    save_graphs,
+)
+
+__all__ = [
+    "AmazonCoBuyComputerDataset",
+    "AmazonCoBuyPhotoDataset",
+    "CoauthorPhysicsDataset",
+    "CoauthorCSDataset",
+    "CoraFullDataset",
+    "AmazonCoBuy",
+    "Coauthor",
+    "CoraFull",
+]
 
 
 def eliminate_self_loops(A):
@@ -27,36 +42,50 @@ class GNNBenchmarkDataset(DGLBuiltinDataset):
 
     Reference: https://github.com/shchur/gnn-benchmark#datasets
     """
-    def __init__(self, name, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        _url = _get_dgl_url('dataset/' + name + '.zip')
-        super(GNNBenchmarkDataset, self).__init__(name=name,
+
+    def __init__(
+        self,
+        name,
+        raw_dir=None,
+        force_reload=False,
+        verbose=False,
+        transform=None,
+    ):
+        _url = _get_dgl_url("dataset/" + name + ".zip")
+        super(GNNBenchmarkDataset, self).__init__(
+            name=name,
             url=_url,
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                                  transform=transform)
+            transform=transform,
+        )
 
     def process(self):
-        npz_path = os.path.join(self.raw_path, self.name + '.npz')
+        npz_path = os.path.join(self.raw_path, self.name + ".npz")
         g = self._load_npz(npz_path)
         g = transforms.reorder_graph(
-            g, node_permute_algo='rcmk', edge_permute_algo='dst', store_ids=False)
+            g,
+            node_permute_algo="rcmk",
+            edge_permute_algo="dst",
+            store_ids=False,
+        )
         self._graph = g
         self._data = [g]
         self._print_info()
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph_v1.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph_v1.bin")
         if os.path.exists(graph_path):
             return True
         return False
 
     def save(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph_v1.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph_v1.bin")
         save_graphs(graph_path, self._graph)
 
     def load(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph_v1.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph_v1.bin")
         graphs, _ = load_graphs(graph_path)
         self._graph = graphs[0]
         self._data = [graphs[0]]
@@ -64,41 +93,59 @@ class GNNBenchmarkDataset(DGLBuiltinDataset):
 
     def _print_info(self):
         if self.verbose:
-            print('  NumNodes: {}'.format(self._graph.number_of_nodes()))
-            print('  NumEdges: {}'.format(self._graph.number_of_edges()))
-            print('  NumFeats: {}'.format(self._graph.ndata['feat'].shape[-1]))
-            print('  NumbClasses: {}'.format(self.num_classes))
+            print("  NumNodes: {}".format(self._graph.number_of_nodes()))
+            print("  NumEdges: {}".format(self._graph.number_of_edges()))
+            print("  NumFeats: {}".format(self._graph.ndata["feat"].shape[-1]))
+            print("  NumbClasses: {}".format(self.num_classes))
 
     def _load_npz(self, file_name):
         with np.load(file_name, allow_pickle=True) as loader:
             loader = dict(loader)
-            num_nodes = loader['adj_shape'][0]
-            adj_matrix = sp.csr_matrix((loader['adj_data'], loader['adj_indices'], loader['adj_indptr']),
-                                    shape=loader['adj_shape']).tocoo()
-
-            if 'attr_data' in loader:
+            num_nodes = loader["adj_shape"][0]
+            adj_matrix = sp.csr_matrix(
+                (
+                    loader["adj_data"],
+                    loader["adj_indices"],
+                    loader["adj_indptr"],
+                ),
+                shape=loader["adj_shape"],
+            ).tocoo()
+
+            if "attr_data" in loader:
                 # Attributes are stored as a sparse CSR matrix
-                attr_matrix = sp.csr_matrix((loader['attr_data'], loader['attr_indices'], loader['attr_indptr']),
-                                            shape=loader['attr_shape']).todense()
-            elif 'attr_matrix' in loader:
+                attr_matrix = sp.csr_matrix(
+                    (
+                        loader["attr_data"],
+                        loader["attr_indices"],
+                        loader["attr_indptr"],
+                    ),
+                    shape=loader["attr_shape"],
+                ).todense()
+            elif "attr_matrix" in loader:
                 # Attributes are stored as a (dense) np.ndarray
-                attr_matrix = loader['attr_matrix']
+                attr_matrix = loader["attr_matrix"]
             else:
                 attr_matrix = None
 
-            if 'labels_data' in loader:
+            if "labels_data" in loader:
                 # Labels are stored as a CSR matrix
-                labels = sp.csr_matrix((loader['labels_data'], loader['labels_indices'], loader['labels_indptr']),
-                                    shape=loader['labels_shape']).todense()
-            elif 'labels' in loader:
+                labels = sp.csr_matrix(
+                    (
+                        loader["labels_data"],
+                        loader["labels_indices"],
+                        loader["labels_indptr"],
+                    ),
+                    shape=loader["labels_shape"],
+                ).todense()
+            elif "labels" in loader:
                 # Labels are stored as a numpy array
-                labels = loader['labels']
+                labels = loader["labels"]
             else:
                 labels = None
         g = dgl_graph((adj_matrix.row, adj_matrix.col))
         g = transforms.to_bidirected(g)
-        g.ndata['feat'] = F.tensor(attr_matrix, F.data_type_dict['float32'])
-        g.ndata['label'] = F.tensor(labels, F.data_type_dict['int64'])
+        g.ndata["feat"] = F.tensor(attr_matrix, F.data_type_dict["float32"])
+        g.ndata["label"] = F.tensor(labels, F.data_type_dict["int64"])
         return g
 
     @property
@@ -107,7 +154,7 @@ class GNNBenchmarkDataset(DGLBuiltinDataset):
         raise NotImplementedError
 
     def __getitem__(self, idx):
-        r""" Get graph by index
+        r"""Get graph by index
 
         Parameters
         ----------
@@ -176,12 +223,17 @@ class CoraFullDataset(GNNBenchmarkDataset):
     >>> feat = g.ndata['feat']  # get node feature
     >>> label = g.ndata['label']  # get node labels
     """
-    def __init__(self, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        super(CoraFullDataset, self).__init__(name="cora_full",
+
+    def __init__(
+        self, raw_dir=None, force_reload=False, verbose=False, transform=None
+    ):
+        super(CoraFullDataset, self).__init__(
+            name="cora_full",
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                              transform=transform)
+            transform=transform,
+        )
 
     @property
     def num_classes(self):
@@ -195,7 +247,7 @@ class CoraFullDataset(GNNBenchmarkDataset):
 
 
 class CoauthorCSDataset(GNNBenchmarkDataset):
-    r""" 'Computer Science (CS)' part of the Coauthor dataset for node classification task.
+    r"""'Computer Science (CS)' part of the Coauthor dataset for node classification task.
 
     Coauthor CS and Coauthor Physics are co-authorship graphs based on the Microsoft Academic Graph
     from the KDD Cup 2016 challenge. Here, nodes are authors, that are connected by an edge if they
@@ -239,12 +291,17 @@ class CoauthorCSDataset(GNNBenchmarkDataset):
     >>> feat = g.ndata['feat']  # get node feature
     >>> label = g.ndata['label']  # get node labels
     """
-    def __init__(self, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        super(CoauthorCSDataset, self).__init__(name='coauthor_cs',
+
+    def __init__(
+        self, raw_dir=None, force_reload=False, verbose=False, transform=None
+    ):
+        super(CoauthorCSDataset, self).__init__(
+            name="coauthor_cs",
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                                transform=transform)
+            transform=transform,
+        )
 
     @property
     def num_classes(self):
@@ -258,7 +315,7 @@ class CoauthorCSDataset(GNNBenchmarkDataset):
 
 
 class CoauthorPhysicsDataset(GNNBenchmarkDataset):
-    r""" 'Physics' part of the Coauthor dataset for node classification task.
+    r"""'Physics' part of the Coauthor dataset for node classification task.
 
     Coauthor CS and Coauthor Physics are co-authorship graphs based on the Microsoft Academic Graph
     from the KDD Cup 2016 challenge. Here, nodes are authors, that are connected by an edge if they
@@ -302,12 +359,17 @@ class CoauthorPhysicsDataset(GNNBenchmarkDataset):
     >>> feat = g.ndata['feat']  # get node feature
     >>> label = g.ndata['label']  # get node labels
     """
-    def __init__(self, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        super(CoauthorPhysicsDataset, self).__init__(name='coauthor_physics',
+
+    def __init__(
+        self, raw_dir=None, force_reload=False, verbose=False, transform=None
+    ):
+        super(CoauthorPhysicsDataset, self).__init__(
+            name="coauthor_physics",
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                                     transform=transform)
+            transform=transform,
+        )
 
     @property
     def num_classes(self):
@@ -321,7 +383,7 @@ class CoauthorPhysicsDataset(GNNBenchmarkDataset):
 
 
 class AmazonCoBuyComputerDataset(GNNBenchmarkDataset):
-    r""" 'Computer' part of the AmazonCoBuy dataset for node classification task.
+    r"""'Computer' part of the AmazonCoBuy dataset for node classification task.
 
     Amazon Computers and Amazon Photo are segments of the Amazon co-purchase graph [McAuley et al., 2015],
     where nodes represent goods, edges indicate that two goods are frequently bought together, node
@@ -364,12 +426,17 @@ class AmazonCoBuyComputerDataset(GNNBenchmarkDataset):
     >>> feat = g.ndata['feat']  # get node feature
     >>> label = g.ndata['label']  # get node labels
     """
-    def __init__(self, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        super(AmazonCoBuyComputerDataset, self).__init__(name='amazon_co_buy_computer',
+
+    def __init__(
+        self, raw_dir=None, force_reload=False, verbose=False, transform=None
+    ):
+        super(AmazonCoBuyComputerDataset, self).__init__(
+            name="amazon_co_buy_computer",
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                                         transform=transform)
+            transform=transform,
+        )
 
     @property
     def num_classes(self):
@@ -426,12 +493,17 @@ class AmazonCoBuyPhotoDataset(GNNBenchmarkDataset):
     >>> feat = g.ndata['feat']  # get node feature
     >>> label = g.ndata['label']  # get node labels
     """
-    def __init__(self, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        super(AmazonCoBuyPhotoDataset, self).__init__(name='amazon_co_buy_photo',
+
+    def __init__(
+        self, raw_dir=None, force_reload=False, verbose=False, transform=None
+    ):
+        super(AmazonCoBuyPhotoDataset, self).__init__(
+            name="amazon_co_buy_photo",
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                                      transform=transform)
+            transform=transform,
+        )
 
     @property
     def num_classes(self):
@@ -446,27 +518,27 @@ class AmazonCoBuyPhotoDataset(GNNBenchmarkDataset):
 
 class CoraFull(CoraFullDataset):
     def __init__(self, **kwargs):
-        deprecate_class('CoraFull', 'CoraFullDataset')
+        deprecate_class("CoraFull", "CoraFullDataset")
         super(CoraFull, self).__init__(**kwargs)
 
 
 def AmazonCoBuy(name):
-    if name == 'computers':
-        deprecate_class('AmazonCoBuy', 'AmazonCoBuyComputerDataset')
+    if name == "computers":
+        deprecate_class("AmazonCoBuy", "AmazonCoBuyComputerDataset")
         return AmazonCoBuyComputerDataset()
-    elif name == 'photo':
-        deprecate_class('AmazonCoBuy', 'AmazonCoBuyPhotoDataset')
+    elif name == "photo":
+        deprecate_class("AmazonCoBuy", "AmazonCoBuyPhotoDataset")
         return AmazonCoBuyPhotoDataset()
     else:
         raise ValueError('Dataset name should be "computers" or "photo".')
 
 
 def Coauthor(name):
-    if name == 'cs':
-        deprecate_class('Coauthor', 'CoauthorCSDataset')
+    if name == "cs":
+        deprecate_class("Coauthor", "CoauthorCSDataset")
         return CoauthorCSDataset()
-    elif name == 'physics':
-        deprecate_class('Coauthor', 'CoauthorPhysicsDataset')
+    elif name == "physics":
+        deprecate_class("Coauthor", "CoauthorPhysicsDataset")
         return CoauthorPhysicsDataset()
     else:
         raise ValueError('Dataset name should be "cs" or "physics".')

python/dgl/data/graph_serialize.py

@@ -6,7 +6,7 @@ import os
 from .. import backend as F
 from .._ffi.function import _init_api
 from .._ffi.object import ObjectBase, register_object
-from ..base import DGLError, dgl_warning
+from ..base import dgl_warning, DGLError
 from ..heterograph import DGLGraph
 from .heterograph_serialize import save_heterographs
 
@@ -58,14 +58,12 @@ class GraphData(ObjectBase):
                 node_tensors[key] = F.zerocopy_to_dgl_ndarray(value)
         else:
             node_tensors = None
-
         if len(g.edata) != 0:
             edge_tensors = dict()
             for key, value in g.edata.items():
                 edge_tensors[key] = F.zerocopy_to_dgl_ndarray(value)
         else:
             edge_tensors = None
-
         return _CAPI_MakeGraphData(ghandle, node_tensors, edge_tensors)
 
     def get_graph(self):
@@ -139,11 +137,8 @@ def save_graphs(filename, g_list, labels=None, formats=None):
         f_path = os.path.dirname(filename)
         if f_path and not os.path.exists(f_path):
             os.makedirs(f_path)
-
     g_sample = g_list[0] if isinstance(g_list, list) else g_list
-    if (
-        type(g_sample) == DGLGraph
-    ):  # Doesn't support DGLGraph's derived class
+    if type(g_sample) == DGLGraph:  # Doesn't support DGLGraph's derived class
         save_heterographs(filename, g_list, labels, formats)
     else:
         raise DGLError(
@@ -221,7 +216,6 @@ def load_graph_v1(filename, idx_list=None):
     label_dict = {}
     for k, v in metadata.labels.items():
         label_dict[k] = F.zerocopy_from_dgl_ndarray(v)
-
     return [gdata.get_graph() for gdata in metadata.graph_data], label_dict
 
 

python/dgl/data/heterograph_serialize.py

@@ -37,6 +37,7 @@ def save_heterographs(filename, g_list, labels, formats):
         filename, gdata_list, tensor_dict_to_ndarray_dict(labels), formats
     )
 
+
 @register_object("heterograph_serialize.HeteroGraphData")
 class HeteroGraphData(ObjectBase):
     """Object to hold the data to be stored for DGLGraph"""

python/dgl/data/karate.py

 """KarateClub Dataset
 """
-import numpy as np
 import networkx as nx
+import numpy as np
 
 from .. import backend as F
+from ..convert import from_networkx
 from .dgl_dataset import DGLDataset
 from .utils import deprecate_property
-from ..convert import from_networkx
 
-__all__ = ['KarateClubDataset', 'KarateClub']
+__all__ = ["KarateClubDataset", "KarateClub"]
 
 
 class KarateClubDataset(DGLDataset):
-    r""" Karate Club dataset for Node Classification
+    r"""Karate Club dataset for Node Classification
 
     Zachary's karate club is a social network of a university
     karate club, described in the paper "An Information Flow
@@ -46,16 +46,20 @@ class KarateClubDataset(DGLDataset):
     >>> g = dataset[0]
     >>> labels = g.ndata['label']
     """
+
     def __init__(self, transform=None):
-        super(KarateClubDataset, self).__init__(name='karate_club', transform=transform)
+        super(KarateClubDataset, self).__init__(
+            name="karate_club", transform=transform
+        )
 
     def process(self):
         kc_graph = nx.karate_club_graph()
         label = np.asarray(
-            [kc_graph.nodes[i]['club'] != 'Mr. Hi' for i in kc_graph.nodes]).astype(np.int64)
+            [kc_graph.nodes[i]["club"] != "Mr. Hi" for i in kc_graph.nodes]
+        ).astype(np.int64)
         label = F.tensor(label)
         g = from_networkx(kc_graph)
-        g.ndata['label'] = label
+        g.ndata["label"] = label
         self._graph = g
         self._data = [g]
 
@@ -65,7 +69,7 @@ class KarateClubDataset(DGLDataset):
         return 2
 
     def __getitem__(self, idx):
-        r""" Get graph object
+        r"""Get graph object
 
         Parameters
         ----------

python/dgl/data/knowledge_graph.py

 from __future__ import absolute_import
 
-import numpy as np
+import os, sys
 import pickle as pkl
+
 import networkx as nx
+
+import numpy as np
 import scipy.sparse as sp
-import os, sys
 
-from .dgl_dataset import DGLBuiltinDataset
-from .utils import download, extract_archive, get_download_dir
-from .utils import save_graphs, load_graphs, save_info, load_info, makedirs, _get_dgl_url
-from .utils import generate_mask_tensor
-from .utils import deprecate_property, deprecate_function
-from ..utils import retry_method_with_fix
 from .. import backend as F
 from ..convert import graph as dgl_graph
+from ..utils import retry_method_with_fix
+
+from .dgl_dataset import DGLBuiltinDataset
+from .utils import (
+    _get_dgl_url,
+    deprecate_function,
+    deprecate_property,
+    download,
+    extract_archive,
+    generate_mask_tensor,
+    get_download_dir,
+    load_graphs,
+    load_info,
+    makedirs,
+    save_graphs,
+    save_info,
+)
+
 
 class KnowledgeGraphDataset(DGLBuiltinDataset):
     """KnowledgeGraph link prediction dataset
@@ -41,22 +55,31 @@ class KnowledgeGraphDataset(DGLBuiltinDataset):
         a transformed version. The :class:`~dgl.DGLGraph` object will be
         transformed before every access.
     """
-    def __init__(self, name, reverse=True, raw_dir=None, force_reload=False,
-                 verbose=True, transform=None):
+
+    def __init__(
+        self,
+        name,
+        reverse=True,
+        raw_dir=None,
+        force_reload=False,
+        verbose=True,
+        transform=None,
+    ):
         self._name = name
         self.reverse = reverse
-        url = _get_dgl_url('dataset/') + '{}.tgz'.format(name)
-        super(KnowledgeGraphDataset, self).__init__(name,
+        url = _get_dgl_url("dataset/") + "{}.tgz".format(name)
+        super(KnowledgeGraphDataset, self).__init__(
+            name,
             url=url,
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                                    transform=transform)
+            transform=transform,
+        )
 
     def download(self):
-        r""" Automatically download data and extract it.
-        """
-        tgz_path = os.path.join(self.raw_dir, self.name + '.tgz')
+        r"""Automatically download data and extract it."""
+        tgz_path = os.path.join(self.raw_dir, self.name + ".tgz")
         download(self.url, path=tgz_path)
         extract_archive(tgz_path, self.raw_path)
 
@@ -66,16 +89,22 @@ class KnowledgeGraphDataset(DGLBuiltinDataset):
         This function will parse these triplets and build the DGLGraph.
         """
         root_path = self.raw_path
-        entity_path = os.path.join(root_path, 'entities.dict')
-        relation_path = os.path.join(root_path, 'relations.dict')
-        train_path = os.path.join(root_path, 'train.txt')
-        valid_path = os.path.join(root_path, 'valid.txt')
-        test_path = os.path.join(root_path, 'test.txt')
+        entity_path = os.path.join(root_path, "entities.dict")
+        relation_path = os.path.join(root_path, "relations.dict")
+        train_path = os.path.join(root_path, "train.txt")
+        valid_path = os.path.join(root_path, "valid.txt")
+        test_path = os.path.join(root_path, "test.txt")
         entity_dict = _read_dictionary(entity_path)
         relation_dict = _read_dictionary(relation_path)
-        train = np.asarray(_read_triplets_as_list(train_path, entity_dict, relation_dict))
-        valid = np.asarray(_read_triplets_as_list(valid_path, entity_dict, relation_dict))
-        test = np.asarray(_read_triplets_as_list(test_path, entity_dict, relation_dict))
+        train = np.asarray(
+            _read_triplets_as_list(train_path, entity_dict, relation_dict)
+        )
+        valid = np.asarray(
+            _read_triplets_as_list(valid_path, entity_dict, relation_dict)
+        )
+        test = np.asarray(
+            _read_triplets_as_list(test_path, entity_dict, relation_dict)
+        )
         num_nodes = len(entity_dict)
         num_rels = len(relation_dict)
         if self.verbose:
@@ -93,25 +122,33 @@ class KnowledgeGraphDataset(DGLBuiltinDataset):
         self._num_nodes = num_nodes
         self._num_rels = num_rels
         # build graph
-        g, data = build_knowledge_graph(num_nodes, num_rels, train, valid, test, reverse=self.reverse)
-        etype, ntype, train_edge_mask, valid_edge_mask, test_edge_mask, train_mask, val_mask, test_mask = data
-        g.edata['train_edge_mask'] = train_edge_mask
-        g.edata['valid_edge_mask'] = valid_edge_mask
-        g.edata['test_edge_mask'] = test_edge_mask
-        g.edata['train_mask'] = train_mask
-        g.edata['val_mask'] = val_mask
-        g.edata['test_mask'] = test_mask
-        g.edata['etype'] = etype
-        g.ndata['ntype'] = ntype
+        g, data = build_knowledge_graph(
+            num_nodes, num_rels, train, valid, test, reverse=self.reverse
+        )
+        (
+            etype,
+            ntype,
+            train_edge_mask,
+            valid_edge_mask,
+            test_edge_mask,
+            train_mask,
+            val_mask,
+            test_mask,
+        ) = data
+        g.edata["train_edge_mask"] = train_edge_mask
+        g.edata["valid_edge_mask"] = valid_edge_mask
+        g.edata["test_edge_mask"] = test_edge_mask
+        g.edata["train_mask"] = train_mask
+        g.edata["val_mask"] = val_mask
+        g.edata["test_mask"] = test_mask
+        g.edata["etype"] = etype
+        g.ndata["ntype"] = ntype
         self._g = g
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path,
-                                  self.save_name + '.bin')
-        info_path = os.path.join(self.save_path,
-                                 self.save_name + '.pkl')
-        if os.path.exists(graph_path) and \
-            os.path.exists(info_path):
+        graph_path = os.path.join(self.save_path, self.save_name + ".bin")
+        info_path = os.path.join(self.save_path, self.save_name + ".pkl")
+        if os.path.exists(graph_path) and os.path.exists(info_path):
             return True
 
         return False
@@ -128,49 +165,65 @@ class KnowledgeGraphDataset(DGLBuiltinDataset):
 
     def save(self):
         """save the graph list and the labels"""
-        graph_path = os.path.join(self.save_path,
-                                  self.save_name + '.bin')
-        info_path = os.path.join(self.save_path,
-                                 self.save_name + '.pkl')
+        graph_path = os.path.join(self.save_path, self.save_name + ".bin")
+        info_path = os.path.join(self.save_path, self.save_name + ".pkl")
         save_graphs(str(graph_path), self._g)
-        save_info(str(info_path), {'num_nodes': self.num_nodes,
-                                   'num_rels': self.num_rels})
+        save_info(
+            str(info_path),
+            {"num_nodes": self.num_nodes, "num_rels": self.num_rels},
+        )
 
     def load(self):
-        graph_path = os.path.join(self.save_path,
-                                  self.save_name + '.bin')
-        info_path = os.path.join(self.save_path,
-                                 self.save_name + '.pkl')
+        graph_path = os.path.join(self.save_path, self.save_name + ".bin")
+        info_path = os.path.join(self.save_path, self.save_name + ".pkl")
         graphs, _ = load_graphs(str(graph_path))
 
         info = load_info(str(info_path))
-        self._num_nodes = info['num_nodes']
-        self._num_rels = info['num_rels']
+        self._num_nodes = info["num_nodes"]
+        self._num_rels = info["num_rels"]
         self._g = graphs[0]
-        train_mask = self._g.edata['train_edge_mask'].numpy()
-        val_mask = self._g.edata['valid_edge_mask'].numpy()
-        test_mask = self._g.edata['test_edge_mask'].numpy()
+        train_mask = self._g.edata["train_edge_mask"].numpy()
+        val_mask = self._g.edata["valid_edge_mask"].numpy()
+        test_mask = self._g.edata["test_edge_mask"].numpy()
 
         # convert mask tensor into bool tensor if possible
-        self._g.edata['train_edge_mask'] = generate_mask_tensor(self._g.edata['train_edge_mask'].numpy())
-        self._g.edata['valid_edge_mask'] = generate_mask_tensor(self._g.edata['valid_edge_mask'].numpy())
-        self._g.edata['test_edge_mask'] = generate_mask_tensor(self._g.edata['test_edge_mask'].numpy())
-        self._g.edata['train_mask'] = generate_mask_tensor(self._g.edata['train_mask'].numpy())
-        self._g.edata['val_mask'] = generate_mask_tensor(self._g.edata['val_mask'].numpy())
-        self._g.edata['test_mask'] = generate_mask_tensor(self._g.edata['test_mask'].numpy())
+        self._g.edata["train_edge_mask"] = generate_mask_tensor(
+            self._g.edata["train_edge_mask"].numpy()
+        )
+        self._g.edata["valid_edge_mask"] = generate_mask_tensor(
+            self._g.edata["valid_edge_mask"].numpy()
+        )
+        self._g.edata["test_edge_mask"] = generate_mask_tensor(
+            self._g.edata["test_edge_mask"].numpy()
+        )
+        self._g.edata["train_mask"] = generate_mask_tensor(
+            self._g.edata["train_mask"].numpy()
+        )
+        self._g.edata["val_mask"] = generate_mask_tensor(
+            self._g.edata["val_mask"].numpy()
+        )
+        self._g.edata["test_mask"] = generate_mask_tensor(
+            self._g.edata["test_mask"].numpy()
+        )
 
         # for compatability (with 0.4.x) generate train_idx, valid_idx and test_idx
-        etype = self._g.edata['etype'].numpy()
+        etype = self._g.edata["etype"].numpy()
         self._etype = etype
-        u, v = self._g.all_edges(form='uv')
+        u, v = self._g.all_edges(form="uv")
         u = u.numpy()
         v = v.numpy()
-        train_idx = np.nonzero(train_mask==1)
-        self._train = np.column_stack((u[train_idx], etype[train_idx], v[train_idx]))
-        valid_idx = np.nonzero(val_mask==1)
-        self._valid = np.column_stack((u[valid_idx], etype[valid_idx], v[valid_idx]))
-        test_idx = np.nonzero(test_mask==1)
-        self._test = np.column_stack((u[test_idx], etype[test_idx], v[test_idx]))
+        train_idx = np.nonzero(train_mask == 1)
+        self._train = np.column_stack(
+            (u[train_idx], etype[train_idx], v[train_idx])
+        )
+        valid_idx = np.nonzero(val_mask == 1)
+        self._valid = np.column_stack(
+            (u[valid_idx], etype[valid_idx], v[valid_idx])
+        )
+        test_idx = np.nonzero(test_mask == 1)
+        self._test = np.column_stack(
+            (u[test_idx], etype[test_idx], v[test_idx])
+        )
 
         if self.verbose:
             print("# entities: {}".format(self.num_nodes))
@@ -189,22 +242,25 @@ class KnowledgeGraphDataset(DGLBuiltinDataset):
 
     @property
     def save_name(self):
-        return self.name + '_dgl_graph'
+        return self.name + "_dgl_graph"
+
 
 def _read_dictionary(filename):
     d = {}
-    with open(filename, 'r+') as f:
+    with open(filename, "r+") as f:
         for line in f:
-            line = line.strip().split('\t')
+            line = line.strip().split("\t")
             d[line[1]] = int(line[0])
     return d
 
+
 def _read_triplets(filename):
-    with open(filename, 'r+') as f:
+    with open(filename, "r+") as f:
         for line in f:
-            processed_line = line.strip().split('\t')
+            processed_line = line.strip().split("\t")
             yield processed_line
 
+
 def _read_triplets_as_list(filename, entity_dict, relation_dict):
     l = []
     for triplet in _read_triplets(filename):
@@ -214,9 +270,11 @@ def _read_triplets_as_list(filename, entity_dict, relation_dict):
         l.append([s, r, o])
     return l
 
-def build_knowledge_graph(num_nodes, num_rels, train, valid, test, reverse=True):
-    """ Create a DGL Homogeneous graph with heterograph info stored as node or edge features.
-    """
+
+def build_knowledge_graph(
+    num_nodes, num_rels, train, valid, test, reverse=True
+):
+    """Create a DGL Homogeneous graph with heterograph info stored as node or edge features."""
     src = []
     rel = []
     dst = []
@@ -315,16 +373,40 @@ def build_knowledge_graph(num_nodes, num_rels, train, valid, test, reverse=True)
     g = dgl_graph((s, d), num_nodes=num_nodes)
     etype = np.concatenate(fg_etype)
     settype = np.concatenate(fg_settype)
-    etype = F.tensor(etype, dtype=F.data_type_dict['int64'])
+    etype = F.tensor(etype, dtype=F.data_type_dict["int64"])
     train_edge_mask = train_edge_mask
     valid_edge_mask = valid_edge_mask
     test_edge_mask = test_edge_mask
-    train_mask = generate_mask_tensor(settype == 1) if reverse is True else train_edge_mask
-    valid_mask = generate_mask_tensor(settype == 2) if reverse is True else valid_edge_mask
-    test_mask = generate_mask_tensor(settype == 3) if reverse is True else test_edge_mask
-    ntype = F.full_1d(num_nodes, 0, dtype=F.data_type_dict['int64'], ctx=F.cpu())
+    train_mask = (
+        generate_mask_tensor(settype == 1)
+        if reverse is True
+        else train_edge_mask
+    )
+    valid_mask = (
+        generate_mask_tensor(settype == 2)
+        if reverse is True
+        else valid_edge_mask
+    )
+    test_mask = (
+        generate_mask_tensor(settype == 3)
+        if reverse is True
+        else test_edge_mask
+    )
+    ntype = F.full_1d(
+        num_nodes, 0, dtype=F.data_type_dict["int64"], ctx=F.cpu()
+    )
+
+    return g, (
+        etype,
+        ntype,
+        train_edge_mask,
+        valid_edge_mask,
+        test_edge_mask,
+        train_mask,
+        valid_mask,
+        test_mask,
+    )
 
-    return g, (etype, ntype, train_edge_mask, valid_edge_mask, test_edge_mask, train_mask, valid_mask, test_mask)
 
 class FB15k237Dataset(KnowledgeGraphDataset):
     r"""FB15k237 link prediction dataset.
@@ -396,11 +478,19 @@ class FB15k237Dataset(KnowledgeGraphDataset):
     >>>
     >>> # Train, Validation and Test
     """
-    def __init__(self, reverse=True, raw_dir=None, force_reload=False,
-                 verbose=True, transform=None):
-        name = 'FB15k-237'
-        super(FB15k237Dataset, self).__init__(name, reverse, raw_dir,
-                                              force_reload, verbose, transform)
+
+    def __init__(
+        self,
+        reverse=True,
+        raw_dir=None,
+        force_reload=False,
+        verbose=True,
+        transform=None,
+    ):
+        name = "FB15k-237"
+        super(FB15k237Dataset, self).__init__(
+            name, reverse, raw_dir, force_reload, verbose, transform
+        )
 
     def __getitem__(self, idx):
         r"""Gets the graph object
@@ -431,6 +521,7 @@ class FB15k237Dataset(KnowledgeGraphDataset):
         r"""The number of graphs in the dataset."""
         return super(FB15k237Dataset, self).__len__()
 
+
 class FB15kDataset(KnowledgeGraphDataset):
     r"""FB15k link prediction dataset.
 
@@ -504,11 +595,19 @@ class FB15kDataset(KnowledgeGraphDataset):
     >>> # Train, Validation and Test
     >>>
     """
-    def __init__(self, reverse=True, raw_dir=None, force_reload=False,
-                 verbose=True, transform=None):
-        name = 'FB15k'
-        super(FB15kDataset, self).__init__(name, reverse, raw_dir,
-                                           force_reload, verbose, transform)
+
+    def __init__(
+        self,
+        reverse=True,
+        raw_dir=None,
+        force_reload=False,
+        verbose=True,
+        transform=None,
+    ):
+        name = "FB15k"
+        super(FB15kDataset, self).__init__(
+            name, reverse, raw_dir, force_reload, verbose, transform
+        )
 
     def __getitem__(self, idx):
         r"""Gets the graph object
@@ -539,8 +638,9 @@ class FB15kDataset(KnowledgeGraphDataset):
         r"""The number of graphs in the dataset."""
         return super(FB15kDataset, self).__len__()
 
+
 class WN18Dataset(KnowledgeGraphDataset):
-    r""" WN18 link prediction dataset.
+    r"""WN18 link prediction dataset.
 
     The WN18 dataset was introduced in `Translating Embeddings for Modeling
     Multi-relational Data <http://papers.nips.cc/paper/5071-translating-embeddings-for-modeling-multi-relational-data.pdf>`_.
@@ -611,11 +711,19 @@ class WN18Dataset(KnowledgeGraphDataset):
     >>> # Train, Validation and Test
     >>>
     """
-    def __init__(self, reverse=True, raw_dir=None, force_reload=False,
-                 verbose=True, transform=None):
-        name = 'wn18'
-        super(WN18Dataset, self).__init__(name, reverse, raw_dir,
-                                          force_reload, verbose, transform)
+
+    def __init__(
+        self,
+        reverse=True,
+        raw_dir=None,
+        force_reload=False,
+        verbose=True,
+        transform=None,
+    ):
+        name = "wn18"
+        super(WN18Dataset, self).__init__(
+            name, reverse, raw_dir, force_reload, verbose, transform
+        )
 
     def __getitem__(self, idx):
         r"""Gets the graph object
@@ -646,6 +754,7 @@ class WN18Dataset(KnowledgeGraphDataset):
         r"""The number of graphs in the dataset."""
         return super(WN18Dataset, self).__len__()
 
+
 def load_data(dataset):
     r"""Load knowledge graph dataset for RGCN link prediction tasks
 
@@ -660,9 +769,9 @@ def load_data(dataset):
     ------
     The dataset object.
     """
-    if dataset == 'wn18':
+    if dataset == "wn18":
         return WN18Dataset()
-    elif dataset == 'FB15k':
+    elif dataset == "FB15k":
         return FB15kDataset()
-    elif dataset == 'FB15k-237':
+    elif dataset == "FB15k-237":
         return FB15k237Dataset()

python/dgl/data/qm7b.py

 """QM7b dataset for graph property prediction (regression)."""
-from scipy import io
-import numpy as np
 import os
 
-from .dgl_dataset import DGLDataset
-from .utils import download, save_graphs, load_graphs, \
-    check_sha1, deprecate_property
+import numpy as np
+from scipy import io
+
 from .. import backend as F
 from ..convert import graph as dgl_graph
 
+from .dgl_dataset import DGLDataset
+from .utils import (
+    check_sha1,
+    deprecate_property,
+    download,
+    load_graphs,
+    save_graphs,
+)
+
 
 class QM7bDataset(DGLDataset):
     r"""QM7b dataset for graph property prediction (regression)
@@ -67,57 +74,69 @@ class QM7bDataset(DGLDataset):
     >>>
     """
 
-    _url = 'http://deepchem.io.s3-website-us-west-1.amazonaws.com/' \
-           'datasets/qm7b.mat'
-    _sha1_str = '4102c744bb9d6fd7b40ac67a300e49cd87e28392'
-
-    def __init__(self, raw_dir=None, force_reload=False, verbose=False, transform=None):
-        super(QM7bDataset, self).__init__(name='qm7b',
+    _url = (
+        "http://deepchem.io.s3-website-us-west-1.amazonaws.com/"
+        "datasets/qm7b.mat"
+    )
+    _sha1_str = "4102c744bb9d6fd7b40ac67a300e49cd87e28392"
+
+    def __init__(
+        self, raw_dir=None, force_reload=False, verbose=False, transform=None
+    ):
+        super(QM7bDataset, self).__init__(
+            name="qm7b",
             url=self._url,
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                          transform=transform)
+            transform=transform,
+        )
 
     def process(self):
-        mat_path = self.raw_path + '.mat'
+        mat_path = self.raw_path + ".mat"
         self.graphs, self.label = self._load_graph(mat_path)
 
     def _load_graph(self, filename):
         data = io.loadmat(filename)
-        labels = F.tensor(data['T'], dtype=F.data_type_dict['float32'])
-        feats = data['X']
+        labels = F.tensor(data["T"], dtype=F.data_type_dict["float32"])
+        feats = data["X"]
         num_graphs = labels.shape[0]
         graphs = []
         for i in range(num_graphs):
             edge_list = feats[i].nonzero()
             g = dgl_graph(edge_list)
-            g.edata['h'] = F.tensor(feats[i][edge_list[0], edge_list[1]].reshape(-1, 1),
-                                    dtype=F.data_type_dict['float32'])
+            g.edata["h"] = F.tensor(
+                feats[i][edge_list[0], edge_list[1]].reshape(-1, 1),
+                dtype=F.data_type_dict["float32"],
+            )
             graphs.append(g)
         return graphs, labels
 
     def save(self):
         """save the graph list and the labels"""
-        graph_path = os.path.join(self.save_path, 'dgl_graph.bin')
-        save_graphs(str(graph_path), self.graphs, {'labels': self.label})
+        graph_path = os.path.join(self.save_path, "dgl_graph.bin")
+        save_graphs(str(graph_path), self.graphs, {"labels": self.label})
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph.bin")
         return os.path.exists(graph_path)
 
     def load(self):
-        graphs, label_dict = load_graphs(os.path.join(self.save_path, 'dgl_graph.bin'))
+        graphs, label_dict = load_graphs(
+            os.path.join(self.save_path, "dgl_graph.bin")
+        )
         self.graphs = graphs
-        self.label = label_dict['labels']
+        self.label = label_dict["labels"]
 
     def download(self):
-        file_path = os.path.join(self.raw_dir, self.name + '.mat')
+        file_path = os.path.join(self.raw_dir, self.name + ".mat")
         download(self.url, path=file_path)
         if not check_sha1(file_path, self._sha1_str):
-            raise UserWarning('File {} is downloaded but the content hash does not match.'
-                              'The repo may be outdated or download may be incomplete. '
-                              'Otherwise you can create an issue for it.'.format(self.name))
+            raise UserWarning(
+                "File {} is downloaded but the content hash does not match."
+                "The repo may be outdated or download may be incomplete. "
+                "Otherwise you can create an issue for it.".format(self.name)
+            )
 
     @property
     def num_tasks(self):
@@ -130,7 +149,7 @@ class QM7bDataset(DGLDataset):
         return 14
 
     def __getitem__(self, idx):
-        r""" Get graph and label by index
+        r"""Get graph and label by index
 
         Parameters
         ----------

python/dgl/data/qm9.py

 """QM9 dataset for graph property prediction (regression)."""
 import os
+
 import numpy as np
 import scipy.sparse as sp
 
-from .dgl_dataset import DGLDataset
-from .utils import download, _get_dgl_url
+from .. import backend as F
 from ..convert import graph as dgl_graph
 from ..transforms import to_bidirected
-from .. import backend as F
+
+from .dgl_dataset import DGLDataset
+from .utils import _get_dgl_url, download
+
 
 class QM9Dataset(DGLDataset):
     r"""QM9 dataset for graph property prediction (regression)
@@ -103,39 +106,44 @@ class QM9Dataset(DGLDataset):
     >>>
     """
 
-    def __init__(self,
+    def __init__(
+        self,
         label_keys,
         cutoff=5.0,
         raw_dir=None,
         force_reload=False,
         verbose=False,
-                 transform=None):
-
+        transform=None,
+    ):
         self.cutoff = cutoff
         self.label_keys = label_keys
-        self._url = _get_dgl_url('dataset/qm9_eV.npz')
+        self._url = _get_dgl_url("dataset/qm9_eV.npz")
 
-        super(QM9Dataset, self).__init__(name='qm9',
+        super(QM9Dataset, self).__init__(
+            name="qm9",
             url=self._url,
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                         transform=transform)
+            transform=transform,
+        )
 
     def process(self):
-        npz_path = f'{self.raw_dir}/qm9_eV.npz'
+        npz_path = f"{self.raw_dir}/qm9_eV.npz"
         data_dict = np.load(npz_path, allow_pickle=True)
         # data_dict['N'] contains the number of atoms in each molecule.
         # Atomic properties (Z and R) of all molecules are concatenated as single tensors,
         # so you need this value to select the correct atoms for each molecule.
-        self.N = data_dict['N']
-        self.R = data_dict['R']
-        self.Z = data_dict['Z']
-        self.label = np.stack([data_dict[key] for key in self.label_keys], axis=1)
+        self.N = data_dict["N"]
+        self.R = data_dict["R"]
+        self.Z = data_dict["Z"]
+        self.label = np.stack(
+            [data_dict[key] for key in self.label_keys], axis=1
+        )
         self.N_cumsum = np.concatenate([[0], np.cumsum(self.N)])
 
     def download(self):
-        file_path = f'{self.raw_dir}/qm9_eV.npz'
+        file_path = f"{self.raw_dir}/qm9_eV.npz"
         if not os.path.exists(file_path):
             download(self._url, path=file_path)
 
@@ -160,7 +168,7 @@ class QM9Dataset(DGLDataset):
         return self.label.shape[1]
 
     def __getitem__(self, idx):
-        r""" Get graph and label by index
+        r"""Get graph and label by index
 
         Parameters
         ----------
@@ -178,18 +186,22 @@ class QM9Dataset(DGLDataset):
         Tensor
             Property values of molecular graphs
         """
-        label = F.tensor(self.label[idx], dtype=F.data_type_dict['float32'])
+        label = F.tensor(self.label[idx], dtype=F.data_type_dict["float32"])
         n_atoms = self.N[idx]
-        R = self.R[self.N_cumsum[idx]:self.N_cumsum[idx + 1]]
+        R = self.R[self.N_cumsum[idx] : self.N_cumsum[idx + 1]]
         dist = np.linalg.norm(R[:, None, :] - R[None, :, :], axis=-1)
-        adj = sp.csr_matrix(dist <= self.cutoff) - sp.eye(n_atoms, dtype=np.bool_)
+        adj = sp.csr_matrix(dist <= self.cutoff) - sp.eye(
+            n_atoms, dtype=np.bool_
+        )
         adj = adj.tocoo()
         u, v = F.tensor(adj.row), F.tensor(adj.col)
         g = dgl_graph((u, v))
         g = to_bidirected(g)
-        g.ndata['R'] = F.tensor(R, dtype=F.data_type_dict['float32'])
-        g.ndata['Z'] = F.tensor(self.Z[self.N_cumsum[idx]:self.N_cumsum[idx + 1]],
-                                dtype=F.data_type_dict['int64'])
+        g.ndata["R"] = F.tensor(R, dtype=F.data_type_dict["float32"])
+        g.ndata["Z"] = F.tensor(
+            self.Z[self.N_cumsum[idx] : self.N_cumsum[idx + 1]],
+            dtype=F.data_type_dict["int64"],
+        )
 
         if self._transform is not None:
             g = self._transform(g)
@@ -205,4 +217,5 @@ class QM9Dataset(DGLDataset):
         """
         return self.label.shape[0]
 
+
 QM9 = QM9Dataset

python/dgl/data/qm9_edge.py

 """ QM9 dataset for graph property prediction (regression) """
 
 import os
+
 import numpy as np
 
-from .dgl_dataset import DGLDataset
-from .utils import download, extract_archive, _get_dgl_url
-from ..convert import graph as dgl_graph
 from .. import backend as F
+from ..convert import graph as dgl_graph
+
+from .dgl_dataset import DGLDataset
+from .utils import _get_dgl_url, download, extract_archive
 
 
 class QM9EdgeDataset(DGLDataset):
@@ -129,19 +131,40 @@ class QM9EdgeDataset(DGLDataset):
     >>>
     """
 
-    keys = ['mu', 'alpha', 'homo', 'lumo', 'gap', 'r2', 'zpve', 'U0', 'U', 'H', 'G', 'Cv', 'U0_atom',
-            'U_atom', 'H_atom', 'G_atom', 'A', 'B', 'C']
+    keys = [
+        "mu",
+        "alpha",
+        "homo",
+        "lumo",
+        "gap",
+        "r2",
+        "zpve",
+        "U0",
+        "U",
+        "H",
+        "G",
+        "Cv",
+        "U0_atom",
+        "U_atom",
+        "H_atom",
+        "G_atom",
+        "A",
+        "B",
+        "C",
+    ]
     map_dict = {}
 
     for i, key in enumerate(keys):
         map_dict[key] = i
 
-    def __init__(self,
+    def __init__(
+        self,
         label_keys=None,
         raw_dir=None,
         force_reload=False,
         verbose=True,
-                 transform=None):
+        transform=None,
+    ):
         if label_keys is None:
             self.label_keys = None
             self.num_labels = 19
@@ -149,18 +172,19 @@ class QM9EdgeDataset(DGLDataset):
             self.label_keys = [self.map_dict[i] for i in label_keys]
             self.num_labels = len(label_keys)
 
+        self._url = _get_dgl_url("dataset/qm9_edge.npz")
 
-        self._url = _get_dgl_url('dataset/qm9_edge.npz')
-
-        super(QM9EdgeDataset, self).__init__(name='qm9Edge',
+        super(QM9EdgeDataset, self).__init__(
+            name="qm9Edge",
             raw_dir=raw_dir,
             url=self._url,
             force_reload=force_reload,
             verbose=verbose,
-                                             transform=transform)
+            transform=transform,
+        )
 
     def download(self):
-        file_path = f'{self.raw_dir}/qm9_edge.npz'
+        file_path = f"{self.raw_dir}/qm9_edge.npz"
         if not os.path.exists(file_path):
             download(self._url, path=file_path)
 
@@ -168,11 +192,12 @@ class QM9EdgeDataset(DGLDataset):
         self.load()
 
     def has_cache(self):
-        npz_path = f'{self.raw_dir}/qm9_edge.npz'
+        npz_path = f"{self.raw_dir}/qm9_edge.npz"
         return os.path.exists(npz_path)
 
     def save(self):
-        np.savez_compressed(f'{self.raw_dir}/qm9_edge.npz',
+        np.savez_compressed(
+            f"{self.raw_dir}/qm9_edge.npz",
             n_node=self.n_node,
             n_edge=self.n_edge,
             node_attr=self.node_attr,
@@ -180,27 +205,28 @@ class QM9EdgeDataset(DGLDataset):
             edge_attr=self.edge_attr,
             src=self.src,
             dst=self.dst,
-                            targets=self.targets)
+            targets=self.targets,
+        )
 
     def load(self):
-        npz_path = f'{self.raw_dir}/qm9_edge.npz'
+        npz_path = f"{self.raw_dir}/qm9_edge.npz"
         data_dict = np.load(npz_path, allow_pickle=True)
 
-        self.n_node = data_dict['n_node']
-        self.n_edge = data_dict['n_edge']
-        self.node_attr = data_dict['node_attr']
-        self.node_pos = data_dict['node_pos']
-        self.edge_attr = data_dict['edge_attr']
-        self.targets = data_dict['targets']
+        self.n_node = data_dict["n_node"]
+        self.n_edge = data_dict["n_edge"]
+        self.node_attr = data_dict["node_attr"]
+        self.node_pos = data_dict["node_pos"]
+        self.edge_attr = data_dict["edge_attr"]
+        self.targets = data_dict["targets"]
 
-        self.src = data_dict['src']
-        self.dst = data_dict['dst']
+        self.src = data_dict["src"]
+        self.dst = data_dict["dst"]
 
         self.n_cumsum = np.concatenate([[0], np.cumsum(self.n_node)])
         self.ne_cumsum = np.concatenate([[0], np.cumsum(self.n_edge)])
 
     def __getitem__(self, idx):
-        r""" Get graph and label by index
+        r"""Get graph and label by index
 
         Parameters
         ----------
@@ -220,18 +246,26 @@ class QM9EdgeDataset(DGLDataset):
             Property values of molecular graphs
         """
 
-        pos = self.node_pos[self.n_cumsum[idx]:self.n_cumsum[idx+1]]
-        src = self.src[self.ne_cumsum[idx]:self.ne_cumsum[idx+1]]
-        dst = self.dst[self.ne_cumsum[idx]:self.ne_cumsum[idx+1]]
+        pos = self.node_pos[self.n_cumsum[idx] : self.n_cumsum[idx + 1]]
+        src = self.src[self.ne_cumsum[idx] : self.ne_cumsum[idx + 1]]
+        dst = self.dst[self.ne_cumsum[idx] : self.ne_cumsum[idx + 1]]
 
         g = dgl_graph((src, dst))
 
-        g.ndata['pos'] = F.tensor(pos, dtype=F.data_type_dict['float32'])
-        g.ndata['attr'] = F.tensor(self.node_attr[self.n_cumsum[idx]:self.n_cumsum[idx+1]], dtype=F.data_type_dict['float32'])
-        g.edata['edge_attr'] = F.tensor(self.edge_attr[self.ne_cumsum[idx]:self.ne_cumsum[idx+1]], dtype=F.data_type_dict['float32'])
-
-
-        label = F.tensor(self.targets[idx][self.label_keys], dtype=F.data_type_dict['float32'])
+        g.ndata["pos"] = F.tensor(pos, dtype=F.data_type_dict["float32"])
+        g.ndata["attr"] = F.tensor(
+            self.node_attr[self.n_cumsum[idx] : self.n_cumsum[idx + 1]],
+            dtype=F.data_type_dict["float32"],
+        )
+        g.edata["edge_attr"] = F.tensor(
+            self.edge_attr[self.ne_cumsum[idx] : self.ne_cumsum[idx + 1]],
+            dtype=F.data_type_dict["float32"],
+        )
+
+        label = F.tensor(
+            self.targets[idx][self.label_keys],
+            dtype=F.data_type_dict["float32"],
+        )
 
         if self._transform is not None:
             g = self._transform(g)
@@ -239,7 +273,7 @@ class QM9EdgeDataset(DGLDataset):
         return g, label
 
     def __len__(self):
-        r""" Number of graphs in the dataset.
+        r"""Number of graphs in the dataset.
 
         Returns
         -------

python/dgl/data/reddit.py

 """ Reddit dataset for community detection """
 from __future__ import absolute_import
 
-import scipy.sparse as sp
-import numpy as np
 import os
 
-from .dgl_dataset import DGLBuiltinDataset
-from .utils import _get_dgl_url, generate_mask_tensor, load_graphs, save_graphs, deprecate_property
+import numpy as np
+
+import scipy.sparse as sp
+
 from .. import backend as F
 from ..convert import from_scipy
 from ..transforms import reorder_graph
 
+from .dgl_dataset import DGLBuiltinDataset
+from .utils import (
+    _get_dgl_url,
+    deprecate_property,
+    generate_mask_tensor,
+    load_graphs,
+    save_graphs,
+)
+
 
 class RedditDataset(DGLBuiltinDataset):
-    r""" Reddit dataset for community detection (node classification)
+    r"""Reddit dataset for community detection (node classification)
 
     This is a graph dataset from Reddit posts made in the month of September, 2014.
     The node label in this case is the community, or “subreddit”, that a post belongs to.
@@ -73,24 +82,36 @@ class RedditDataset(DGLBuiltinDataset):
     >>>
     >>> # Train, Validation and Test
     """
-    def __init__(self, self_loop=False, raw_dir=None, force_reload=False,
-                 verbose=False, transform=None):
+
+    def __init__(
+        self,
+        self_loop=False,
+        raw_dir=None,
+        force_reload=False,
+        verbose=False,
+        transform=None,
+    ):
         self_loop_str = ""
         if self_loop:
             self_loop_str = "_self_loop"
         _url = _get_dgl_url("dataset/reddit{}.zip".format(self_loop_str))
         self._self_loop_str = self_loop_str
-        super(RedditDataset, self).__init__(name='reddit{}'.format(self_loop_str),
+        super(RedditDataset, self).__init__(
+            name="reddit{}".format(self_loop_str),
             url=_url,
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                            transform=transform)
+            transform=transform,
+        )
 
     def process(self):
         # graph
-        coo_adj = sp.load_npz(os.path.join(
-            self.raw_path, "reddit{}_graph.npz".format(self._self_loop_str)))
+        coo_adj = sp.load_npz(
+            os.path.join(
+                self.raw_path, "reddit{}_graph.npz".format(self._self_loop_str)
+            )
+        )
         self._graph = from_scipy(coo_adj)
         # features and labels
         reddit_data = np.load(os.path.join(self.raw_path, "reddit_data.npz"))
@@ -98,48 +119,74 @@ class RedditDataset(DGLBuiltinDataset):
         labels = reddit_data["label"]
         # tarin/val/test indices
         node_types = reddit_data["node_types"]
-        train_mask = (node_types == 1)
-        val_mask = (node_types == 2)
-        test_mask = (node_types == 3)
-        self._graph.ndata['train_mask'] = generate_mask_tensor(train_mask)
-        self._graph.ndata['val_mask'] = generate_mask_tensor(val_mask)
-        self._graph.ndata['test_mask'] = generate_mask_tensor(test_mask)
-        self._graph.ndata['feat'] = F.tensor(features, dtype=F.data_type_dict['float32'])
-        self._graph.ndata['label'] = F.tensor(labels, dtype=F.data_type_dict['int64'])
+        train_mask = node_types == 1
+        val_mask = node_types == 2
+        test_mask = node_types == 3
+        self._graph.ndata["train_mask"] = generate_mask_tensor(train_mask)
+        self._graph.ndata["val_mask"] = generate_mask_tensor(val_mask)
+        self._graph.ndata["test_mask"] = generate_mask_tensor(test_mask)
+        self._graph.ndata["feat"] = F.tensor(
+            features, dtype=F.data_type_dict["float32"]
+        )
+        self._graph.ndata["label"] = F.tensor(
+            labels, dtype=F.data_type_dict["int64"]
+        )
         self._graph = reorder_graph(
-            self._graph, node_permute_algo='rcmk', edge_permute_algo='dst', store_ids=False)
+            self._graph,
+            node_permute_algo="rcmk",
+            edge_permute_algo="dst",
+            store_ids=False,
+        )
 
         self._print_info()
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph.bin")
         if os.path.exists(graph_path):
             return True
         return False
 
     def save(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph.bin")
         save_graphs(graph_path, self._graph)
 
     def load(self):
-        graph_path = os.path.join(self.save_path, 'dgl_graph.bin')
+        graph_path = os.path.join(self.save_path, "dgl_graph.bin")
         graphs, _ = load_graphs(graph_path)
         self._graph = graphs[0]
-        self._graph.ndata['train_mask'] = generate_mask_tensor(self._graph.ndata['train_mask'].numpy())
-        self._graph.ndata['val_mask'] = generate_mask_tensor(self._graph.ndata['val_mask'].numpy())
-        self._graph.ndata['test_mask'] = generate_mask_tensor(self._graph.ndata['test_mask'].numpy())
+        self._graph.ndata["train_mask"] = generate_mask_tensor(
+            self._graph.ndata["train_mask"].numpy()
+        )
+        self._graph.ndata["val_mask"] = generate_mask_tensor(
+            self._graph.ndata["val_mask"].numpy()
+        )
+        self._graph.ndata["test_mask"] = generate_mask_tensor(
+            self._graph.ndata["test_mask"].numpy()
+        )
         self._print_info()
 
     def _print_info(self):
         if self.verbose:
-            print('Finished data loading.')
-            print('  NumNodes: {}'.format(self._graph.number_of_nodes()))
-            print('  NumEdges: {}'.format(self._graph.number_of_edges()))
-            print('  NumFeats: {}'.format(self._graph.ndata['feat'].shape[1]))
-            print('  NumClasses: {}'.format(self.num_classes))
-            print('  NumTrainingSamples: {}'.format(F.nonzero_1d(self._graph.ndata['train_mask']).shape[0]))
-            print('  NumValidationSamples: {}'.format(F.nonzero_1d(self._graph.ndata['val_mask']).shape[0]))
-            print('  NumTestSamples: {}'.format(F.nonzero_1d(self._graph.ndata['test_mask']).shape[0]))
+            print("Finished data loading.")
+            print("  NumNodes: {}".format(self._graph.number_of_nodes()))
+            print("  NumEdges: {}".format(self._graph.number_of_edges()))
+            print("  NumFeats: {}".format(self._graph.ndata["feat"].shape[1]))
+            print("  NumClasses: {}".format(self.num_classes))
+            print(
+                "  NumTrainingSamples: {}".format(
+                    F.nonzero_1d(self._graph.ndata["train_mask"]).shape[0]
+                )
+            )
+            print(
+                "  NumValidationSamples: {}".format(
+                    F.nonzero_1d(self._graph.ndata["val_mask"]).shape[0]
+                )
+            )
+            print(
+                "  NumTestSamples: {}".format(
+                    F.nonzero_1d(self._graph.ndata["test_mask"]).shape[0]
+                )
+            )
 
     @property
     def num_classes(self):
@@ -147,7 +194,7 @@ class RedditDataset(DGLBuiltinDataset):
         return 41
 
     def __getitem__(self, idx):
-        r""" Get graph by index
+        r"""Get graph by index
 
         Parameters
         ----------

python/dgl/data/tree.py

@@ -4,19 +4,28 @@ Including:
 """
 from __future__ import absolute_import
 
+import os
+
 from collections import OrderedDict
+
 import networkx as nx
 
 import numpy as np
-import os
 
-from .dgl_dataset import DGLBuiltinDataset
 from .. import backend as F
-from .utils import _get_dgl_url, save_graphs, save_info, load_graphs, \
-    load_info, deprecate_property
 from ..convert import from_networkx
 
-__all__ = ['SST', 'SSTDataset']
+from .dgl_dataset import DGLBuiltinDataset
+from .utils import (
+    _get_dgl_url,
+    deprecate_property,
+    load_graphs,
+    load_info,
+    save_graphs,
+    save_info,
+)
+
+__all__ = ["SST", "SSTDataset"]
 
 
 class SSTDataset(DGLBuiltinDataset):
@@ -104,45 +113,58 @@ class SSTDataset(DGLBuiltinDataset):
     PAD_WORD = -1  # special pad word id
     UNK_WORD = -1  # out-of-vocabulary word id
 
-    def __init__(self,
-                 mode='train',
+    def __init__(
+        self,
+        mode="train",
         glove_embed_file=None,
         vocab_file=None,
         raw_dir=None,
         force_reload=False,
         verbose=False,
-                 transform=None):
-        assert mode in ['train', 'dev', 'test', 'tiny']
-        _url = _get_dgl_url('dataset/sst.zip')
-        self._glove_embed_file = glove_embed_file if mode == 'train' else None
+        transform=None,
+    ):
+        assert mode in ["train", "dev", "test", "tiny"]
+        _url = _get_dgl_url("dataset/sst.zip")
+        self._glove_embed_file = glove_embed_file if mode == "train" else None
         self.mode = mode
         self._vocab_file = vocab_file
-        super(SSTDataset, self).__init__(name='sst',
+        super(SSTDataset, self).__init__(
+            name="sst",
             url=_url,
             raw_dir=raw_dir,
             force_reload=force_reload,
             verbose=verbose,
-                                         transform=transform)
+            transform=transform,
+        )
 
     def process(self):
         from nltk.corpus.reader import BracketParseCorpusReader
+
         # load vocab file
         self._vocab = OrderedDict()
-        vocab_file = self._vocab_file if self._vocab_file is not None else os.path.join(self.raw_path, 'vocab.txt')
-        with open(vocab_file, encoding='utf-8') as vf:
+        vocab_file = (
+            self._vocab_file
+            if self._vocab_file is not None
+            else os.path.join(self.raw_path, "vocab.txt")
+        )
+        with open(vocab_file, encoding="utf-8") as vf:
             for line in vf.readlines():
                 line = line.strip()
                 self._vocab[line] = len(self._vocab)
 
         # filter glove
-        if self._glove_embed_file is not None and os.path.exists(self._glove_embed_file):
+        if self._glove_embed_file is not None and os.path.exists(
+            self._glove_embed_file
+        ):
             glove_emb = {}
-            with open(self._glove_embed_file, 'r', encoding='utf-8') as pf:
+            with open(self._glove_embed_file, "r", encoding="utf-8") as pf:
                 for line in pf.readlines():
-                    sp = line.split(' ')
+                    sp = line.split(" ")
                     if sp[0].lower() in self._vocab:
-                        glove_emb[sp[0].lower()] = np.asarray([float(x) for x in sp[1:]])
-        files = ['{}.txt'.format(self.mode)]
+                        glove_emb[sp[0].lower()] = np.asarray(
+                            [float(x) for x in sp[1:]]
+                        )
+        files = ["{}.txt".format(self.mode)]
         corpus = BracketParseCorpusReader(self.raw_path, files)
         sents = corpus.parsed_sents(files[0])
 
@@ -150,15 +172,27 @@ class SSTDataset(DGLBuiltinDataset):
         pretrained_emb = []
         fail_cnt = 0
         for line in self._vocab.keys():
-            if self._glove_embed_file is not None and os.path.exists(self._glove_embed_file):
+            if self._glove_embed_file is not None and os.path.exists(
+                self._glove_embed_file
+            ):
                 if not line.lower() in glove_emb:
                     fail_cnt += 1
-                pretrained_emb.append(glove_emb.get(line.lower(), np.random.uniform(-0.05, 0.05, 300)))
+                pretrained_emb.append(
+                    glove_emb.get(
+                        line.lower(), np.random.uniform(-0.05, 0.05, 300)
+                    )
+                )
 
         self._pretrained_emb = None
-        if self._glove_embed_file is not None and os.path.exists(self._glove_embed_file):
+        if self._glove_embed_file is not None and os.path.exists(
+            self._glove_embed_file
+        ):
             self._pretrained_emb = F.tensor(np.stack(pretrained_emb, 0))
-            print('Miss word in GloVe {0:.4f}'.format(1.0 * fail_cnt / len(self._pretrained_emb)))
+            print(
+                "Miss word in GloVe {0:.4f}".format(
+                    1.0 * fail_cnt / len(self._pretrained_emb)
+                )
+            )
         # build trees
         self._trees = []
         for sent in sents:
@@ -175,44 +209,46 @@ class SSTDataset(DGLBuiltinDataset):
                     word = self.vocab.get(child[0].lower(), self.UNK_WORD)
                     g.add_node(cid, x=word, y=int(child.label()), mask=1)
                 else:
-                    g.add_node(cid, x=SSTDataset.PAD_WORD, y=int(child.label()), mask=0)
+                    g.add_node(
+                        cid, x=SSTDataset.PAD_WORD, y=int(child.label()), mask=0
+                    )
                     _rec_build(cid, child)
                 g.add_edge(cid, nid)
 
         # add root
         g.add_node(0, x=SSTDataset.PAD_WORD, y=int(root.label()), mask=0)
         _rec_build(0, root)
-        ret = from_networkx(g, node_attrs=['x', 'y', 'mask'])
+        ret = from_networkx(g, node_attrs=["x", "y", "mask"])
         return ret
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path, self.mode + '_dgl_graph.bin')
-        vocab_path = os.path.join(self.save_path, 'vocab.pkl')
+        graph_path = os.path.join(self.save_path, self.mode + "_dgl_graph.bin")
+        vocab_path = os.path.join(self.save_path, "vocab.pkl")
         return os.path.exists(graph_path) and os.path.exists(vocab_path)
 
     def save(self):
-        graph_path = os.path.join(self.save_path, self.mode + '_dgl_graph.bin')
+        graph_path = os.path.join(self.save_path, self.mode + "_dgl_graph.bin")
         save_graphs(graph_path, self._trees)
-        vocab_path = os.path.join(self.save_path, 'vocab.pkl')
-        save_info(vocab_path, {'vocab': self.vocab})
+        vocab_path = os.path.join(self.save_path, "vocab.pkl")
+        save_info(vocab_path, {"vocab": self.vocab})
         if self.pretrained_emb:
-            emb_path = os.path.join(self.save_path, 'emb.pkl')
-            save_info(emb_path, {'embed': self.pretrained_emb})
+            emb_path = os.path.join(self.save_path, "emb.pkl")
+            save_info(emb_path, {"embed": self.pretrained_emb})
 
     def load(self):
-        graph_path = os.path.join(self.save_path, self.mode + '_dgl_graph.bin')
-        vocab_path = os.path.join(self.save_path, 'vocab.pkl')
-        emb_path = os.path.join(self.save_path, 'emb.pkl')
+        graph_path = os.path.join(self.save_path, self.mode + "_dgl_graph.bin")
+        vocab_path = os.path.join(self.save_path, "vocab.pkl")
+        emb_path = os.path.join(self.save_path, "emb.pkl")
 
         self._trees = load_graphs(graph_path)[0]
-        self._vocab = load_info(vocab_path)['vocab']
+        self._vocab = load_info(vocab_path)["vocab"]
         self._pretrained_emb = None
         if os.path.exists(emb_path):
-            self._pretrained_emb = load_info(emb_path)['embed']
+            self._pretrained_emb = load_info(emb_path)["embed"]
 
     @property
     def vocab(self):
-        r""" Vocabulary
+        r"""Vocabulary
 
         Returns
         -------
@@ -226,7 +262,7 @@ class SSTDataset(DGLBuiltinDataset):
         return self._pretrained_emb
 
     def __getitem__(self, idx):
-        r""" Get graph by index
+        r"""Get graph by index
 
         Parameters
         ----------

python/dgl/data/tu.py

 from __future__ import absolute_import
-import numpy as np
+
 import os
 
-from .dgl_dataset import DGLBuiltinDataset
-from .utils import loadtxt, save_graphs, load_graphs, save_info, load_info
+import numpy as np
+
 from .. import backend as F
 from ..convert import graph as dgl_graph
 
+from .dgl_dataset import DGLBuiltinDataset
+from .utils import load_graphs, load_info, loadtxt, save_graphs, save_info
+
+
 class LegacyTUDataset(DGLBuiltinDataset):
     r"""LegacyTUDataset contains lots of graph kernel datasets for graph classification.
 
@@ -77,38 +81,60 @@ class LegacyTUDataset(DGLBuiltinDataset):
 
     _url = r"https://www.chrsmrrs.com/graphkerneldatasets/{}.zip"
 
-    def __init__(self, name, use_pandas=False,
-                 hidden_size=10, max_allow_node=None,
-                 raw_dir=None, force_reload=False, verbose=False, transform=None):
-
+    def __init__(
+        self,
+        name,
+        use_pandas=False,
+        hidden_size=10,
+        max_allow_node=None,
+        raw_dir=None,
+        force_reload=False,
+        verbose=False,
+        transform=None,
+    ):
         url = self._url.format(name)
         self.hidden_size = hidden_size
         self.max_allow_node = max_allow_node
         self.use_pandas = use_pandas
-        super(LegacyTUDataset, self).__init__(name=name, url=url, raw_dir=raw_dir,
+        super(LegacyTUDataset, self).__init__(
+            name=name,
+            url=url,
+            raw_dir=raw_dir,
             hash_key=(name, use_pandas, hidden_size, max_allow_node),
-                                              force_reload=force_reload, verbose=verbose, transform=transform)
+            force_reload=force_reload,
+            verbose=verbose,
+            transform=transform,
+        )
 
     def process(self):
         self.data_mode = None
 
         if self.use_pandas:
             import pandas as pd
+
             DS_edge_list = self._idx_from_zero(
-                pd.read_csv(self._file_path("A"), delimiter=",", dtype=int, header=None).values)
+                pd.read_csv(
+                    self._file_path("A"), delimiter=",", dtype=int, header=None
+                ).values
+            )
         else:
             DS_edge_list = self._idx_from_zero(
-                np.genfromtxt(self._file_path("A"), delimiter=",", dtype=int))
+                np.genfromtxt(self._file_path("A"), delimiter=",", dtype=int)
+            )
 
         DS_indicator = self._idx_from_zero(
-            np.genfromtxt(self._file_path("graph_indicator"), dtype=int))
+            np.genfromtxt(self._file_path("graph_indicator"), dtype=int)
+        )
         if os.path.exists(self._file_path("graph_labels")):
             DS_graph_labels = self._idx_from_zero(
-                np.genfromtxt(self._file_path("graph_labels"), dtype=int))
+                np.genfromtxt(self._file_path("graph_labels"), dtype=int)
+            )
             self.num_labels = max(DS_graph_labels) + 1
             self.graph_labels = DS_graph_labels
         elif os.path.exists(self._file_path("graph_attributes")):
-            DS_graph_labels = np.genfromtxt(self._file_path("graph_attributes"), dtype=float)
+            DS_graph_labels = np.genfromtxt(
+                self._file_path("graph_attributes"), dtype=float
+            )
             self.num_labels = None
             self.graph_labels = DS_graph_labels
         else:
@@ -130,33 +156,42 @@ class LegacyTUDataset(DGLBuiltinDataset):
 
         try:
             DS_node_labels = self._idx_from_zero(
-                np.loadtxt(self._file_path("node_labels"), dtype=int))
-            g.ndata['node_label'] = F.tensor(DS_node_labels)
+                np.loadtxt(self._file_path("node_labels"), dtype=int)
+            )
+            g.ndata["node_label"] = F.tensor(DS_node_labels)
             one_hot_node_labels = self._to_onehot(DS_node_labels)
             for idxs, g in zip(node_idx_list, self.graph_lists):
-                g.ndata['feat'] = F.tensor(one_hot_node_labels[idxs, :], F.float32)
+                g.ndata["feat"] = F.tensor(
+                    one_hot_node_labels[idxs, :], F.float32
+                )
             self.data_mode = "node_label"
         except IOError:
             print("No Node Label Data")
 
         try:
             DS_node_attr = np.loadtxt(
-                self._file_path("node_attributes"), delimiter=",")
+                self._file_path("node_attributes"), delimiter=","
+            )
             if DS_node_attr.ndim == 1:
                 DS_node_attr = np.expand_dims(DS_node_attr, -1)
             for idxs, g in zip(node_idx_list, self.graph_lists):
-                g.ndata['feat'] = F.tensor(DS_node_attr[idxs, :], F.float32)
+                g.ndata["feat"] = F.tensor(DS_node_attr[idxs, :], F.float32)
             self.data_mode = "node_attr"
         except IOError:
             print("No Node Attribute Data")
 
-        if 'feat' not in g.ndata.keys():
+        if "feat" not in g.ndata.keys():
             for idxs, g in zip(node_idx_list, self.graph_lists):
-                g.ndata['feat'] = F.ones((g.number_of_nodes(), self.hidden_size),
-                                         F.float32, F.cpu())
+                g.ndata["feat"] = F.ones(
+                    (g.number_of_nodes(), self.hidden_size), F.float32, F.cpu()
+                )
             self.data_mode = "constant"
             if self.verbose:
-                print("Use Constant one as Feature with hidden size {}".format(self.hidden_size))
+                print(
+                    "Use Constant one as Feature with hidden size {}".format(
+                        self.hidden_size
+                    )
+                )
 
         # remove graphs that are too large by user given standard
         # optional pre-processing steop in conformity with Rex Ying's original
@@ -165,39 +200,56 @@ class LegacyTUDataset(DGLBuiltinDataset):
             preserve_idx = []
             if self.verbose:
                 print("original dataset length : ", len(self.graph_lists))
-            for (i, g) in enumerate(self.graph_lists):
+            for i, g in enumerate(self.graph_lists):
                 if g.number_of_nodes() <= self.max_allow_node:
                     preserve_idx.append(i)
             self.graph_lists = [self.graph_lists[i] for i in preserve_idx]
             if self.verbose:
-                print("after pruning graphs that are too big : ", len(self.graph_lists))
+                print(
+                    "after pruning graphs that are too big : ",
+                    len(self.graph_lists),
+                )
             self.graph_labels = [self.graph_labels[i] for i in preserve_idx]
             self.max_num_node = self.max_allow_node
         self.graph_labels = F.tensor(self.graph_labels)
 
     def save(self):
-        graph_path = os.path.join(self.save_path, 'legacy_tu_{}_{}.bin'.format(self.name, self.hash))
-        info_path = os.path.join(self.save_path, 'legacy_tu_{}_{}.pkl'.format(self.name, self.hash))
-        label_dict = {'labels': self.graph_labels}
-        info_dict = {'max_num_node': self.max_num_node,
-                     'num_labels': self.num_labels}
+        graph_path = os.path.join(
+            self.save_path, "legacy_tu_{}_{}.bin".format(self.name, self.hash)
+        )
+        info_path = os.path.join(
+            self.save_path, "legacy_tu_{}_{}.pkl".format(self.name, self.hash)
+        )
+        label_dict = {"labels": self.graph_labels}
+        info_dict = {
+            "max_num_node": self.max_num_node,
+            "num_labels": self.num_labels,
+        }
         save_graphs(str(graph_path), self.graph_lists, label_dict)
         save_info(str(info_path), info_dict)
 
     def load(self):
-        graph_path = os.path.join(self.save_path, 'legacy_tu_{}_{}.bin'.format(self.name, self.hash))
-        info_path = os.path.join(self.save_path, 'legacy_tu_{}_{}.pkl'.format(self.name, self.hash))
+        graph_path = os.path.join(
+            self.save_path, "legacy_tu_{}_{}.bin".format(self.name, self.hash)
+        )
+        info_path = os.path.join(
+            self.save_path, "legacy_tu_{}_{}.pkl".format(self.name, self.hash)
+        )
         graphs, label_dict = load_graphs(str(graph_path))
         info_dict = load_info(str(info_path))
 
         self.graph_lists = graphs
-        self.graph_labels = label_dict['labels']
-        self.max_num_node = info_dict['max_num_node']
-        self.num_labels = info_dict['num_labels']
+        self.graph_labels = label_dict["labels"]
+        self.max_num_node = info_dict["max_num_node"]
+        self.num_labels = info_dict["num_labels"]
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path, 'legacy_tu_{}_{}.bin'.format(self.name, self.hash))
-        info_path = os.path.join(self.save_path, 'legacy_tu_{}_{}.pkl'.format(self.name, self.hash))
+        graph_path = os.path.join(
+            self.save_path, "legacy_tu_{}_{}.bin".format(self.name, self.hash)
+        )
+        info_path = os.path.join(
+            self.save_path, "legacy_tu_{}_{}.pkl".format(self.name, self.hash)
+        )
         if os.path.exists(graph_path) and os.path.exists(info_path):
             return True
         return False
@@ -226,8 +278,9 @@ class LegacyTUDataset(DGLBuiltinDataset):
         return len(self.graph_lists)
 
     def _file_path(self, category):
-        return os.path.join(self.raw_path, self.name,
-                            "{}_{}.txt".format(self.name, category))
+        return os.path.join(
+            self.raw_path, self.name, "{}_{}.txt".format(self.name, category)
+        )
 
     @staticmethod
     def _idx_from_zero(idx_tensor):
@@ -242,14 +295,17 @@ class LegacyTUDataset(DGLBuiltinDataset):
         return one_hot_tensor
 
     def statistics(self):
-        return self.graph_lists[0].ndata['feat'].shape[1],\
-            self.num_labels,\
-            self.max_num_node
+        return (
+            self.graph_lists[0].ndata["feat"].shape[1],
+            self.num_labels,
+            self.max_num_node,
+        )
 
     @property
     def num_classes(self):
         return int(self.num_labels)
 
+
 class TUDataset(DGLBuiltinDataset):
     r"""
     TUDataset contains lots of graph kernel datasets for graph classification.
@@ -322,25 +378,46 @@ class TUDataset(DGLBuiltinDataset):
 
     _url = r"https://www.chrsmrrs.com/graphkerneldatasets/{}.zip"
 
-    def __init__(self, name, raw_dir=None, force_reload=False, verbose=False, transform=None):
+    def __init__(
+        self,
+        name,
+        raw_dir=None,
+        force_reload=False,
+        verbose=False,
+        transform=None,
+    ):
         url = self._url.format(name)
-        super(TUDataset, self).__init__(name=name, url=url,
-                                        raw_dir=raw_dir, force_reload=force_reload,
-                                        verbose=verbose, transform=transform)
+        super(TUDataset, self).__init__(
+            name=name,
+            url=url,
+            raw_dir=raw_dir,
+            force_reload=force_reload,
+            verbose=verbose,
+            transform=transform,
+        )
 
     def process(self):
         DS_edge_list = self._idx_from_zero(
-            loadtxt(self._file_path("A"), delimiter=",").astype(int))
+            loadtxt(self._file_path("A"), delimiter=",").astype(int)
+        )
         DS_indicator = self._idx_from_zero(
-            loadtxt(self._file_path("graph_indicator"), delimiter=",").astype(int))
+            loadtxt(self._file_path("graph_indicator"), delimiter=",").astype(
+                int
+            )
+        )
 
         if os.path.exists(self._file_path("graph_labels")):
             DS_graph_labels = self._idx_reset(
-                loadtxt(self._file_path("graph_labels"), delimiter=",").astype(int))
+                loadtxt(self._file_path("graph_labels"), delimiter=",").astype(
+                    int
+                )
+            )
             self.num_labels = int(max(DS_graph_labels) + 1)
             self.graph_labels = F.tensor(DS_graph_labels)
         elif os.path.exists(self._file_path("graph_attributes")):
-            DS_graph_labels = loadtxt(self._file_path("graph_attributes"), delimiter=",").astype(float)
+            DS_graph_labels = loadtxt(
+                self._file_path("graph_attributes"), delimiter=","
+            ).astype(float)
             self.num_labels = None
             self.graph_labels = F.tensor(DS_graph_labels)
         else:
@@ -358,19 +435,17 @@ class TUDataset(DGLBuiltinDataset):
             if len(node_idx[0]) > self.max_num_node:
                 self.max_num_node = len(node_idx[0])
 
-
         self.attr_dict = {
-            'node_labels': ('ndata', 'node_labels'),
-            'node_attributes': ('ndata', 'node_attr'),
-            'edge_labels': ('edata', 'edge_labels'),
-            'edge_attributes': ('edata', 'node_labels'),
+            "node_labels": ("ndata", "node_labels"),
+            "node_attributes": ("ndata", "node_attr"),
+            "edge_labels": ("edata", "edge_labels"),
+            "edge_attributes": ("edata", "node_labels"),
         }
 
         for filename, field_name in self.attr_dict.items():
             try:
-                data = loadtxt(self._file_path(filename),
-                               delimiter=',')
-                if 'label' in filename:
+                data = loadtxt(self._file_path(filename), delimiter=",")
+                if "label" in filename:
                     data = F.tensor(self._idx_from_zero(data))
                 else:
                     data = F.tensor(data)
@@ -381,28 +456,30 @@ class TUDataset(DGLBuiltinDataset):
         self.graph_lists = [g.subgraph(node_idx) for node_idx in node_idx_list]
 
     def save(self):
-        graph_path = os.path.join(self.save_path, 'tu_{}.bin'.format(self.name))
-        info_path = os.path.join(self.save_path, 'tu_{}.pkl'.format(self.name))
-        label_dict = {'labels': self.graph_labels}
-        info_dict = {'max_num_node': self.max_num_node,
-                     'num_labels': self.num_labels}
+        graph_path = os.path.join(self.save_path, "tu_{}.bin".format(self.name))
+        info_path = os.path.join(self.save_path, "tu_{}.pkl".format(self.name))
+        label_dict = {"labels": self.graph_labels}
+        info_dict = {
+            "max_num_node": self.max_num_node,
+            "num_labels": self.num_labels,
+        }
         save_graphs(str(graph_path), self.graph_lists, label_dict)
         save_info(str(info_path), info_dict)
 
     def load(self):
-        graph_path = os.path.join(self.save_path, 'tu_{}.bin'.format(self.name))
-        info_path = os.path.join(self.save_path, 'tu_{}.pkl'.format(self.name))
+        graph_path = os.path.join(self.save_path, "tu_{}.bin".format(self.name))
+        info_path = os.path.join(self.save_path, "tu_{}.pkl".format(self.name))
         graphs, label_dict = load_graphs(str(graph_path))
         info_dict = load_info(str(info_path))
 
         self.graph_lists = graphs
-        self.graph_labels = label_dict['labels']
-        self.max_num_node = info_dict['max_num_node']
-        self.num_labels = info_dict['num_labels']
+        self.graph_labels = label_dict["labels"]
+        self.max_num_node = info_dict["max_num_node"]
+        self.num_labels = info_dict["num_labels"]
 
     def has_cache(self):
-        graph_path = os.path.join(self.save_path, 'tu_{}.bin'.format(self.name))
-        info_path = os.path.join(self.save_path, 'tu_{}.pkl'.format(self.name))
+        graph_path = os.path.join(self.save_path, "tu_{}.bin".format(self.name))
+        info_path = os.path.join(self.save_path, "tu_{}.pkl".format(self.name))
         if os.path.exists(graph_path) and os.path.exists(info_path):
             return True
         return False
@@ -431,8 +508,9 @@ class TUDataset(DGLBuiltinDataset):
         return len(self.graph_lists)
 
     def _file_path(self, category):
-        return os.path.join(self.raw_path, self.name,
-                            "{}_{}.txt".format(self.name, category))
+        return os.path.join(
+            self.raw_path, self.name, "{}_{}.txt".format(self.name, category)
+        )
 
     @staticmethod
     def _idx_from_zero(idx_tensor):
@@ -447,9 +525,11 @@ class TUDataset(DGLBuiltinDataset):
         return new_idx_tensor
 
     def statistics(self):
-        return self.graph_lists[0].ndata['feat'].shape[1], \
-            self.num_labels, \
-            self.max_num_node
+        return (
+            self.graph_lists[0].ndata["feat"].shape[1],
+            self.num_labels,
+            self.max_num_node,
+        )
 
     @property
     def num_classes(self):