[DGL-LifeSci] Migration and Refactor (#1226)

* First commit * Update * Update splitters * Update * Update * Update * Update * Update * Update * Migrate ACNN * Fix * Fix * Update * Update * Update * Update * Update * Update * Finish classification * Update * Fix * Update * Update * Update * Fix * Fix * Fix * Update * Update * Update * trigger CI * Fix CI * Update * Update * Update * Add default values * Rename * Update deprecation message

[DGL-LifeSci] Migration and Refactor (#1226)
* First commit * Update * Update splitters * Update * Update * Update * Update * Update * Update * Migrate ACNN * Fix * Fix * Update * Update * Update * Update * Update * Update * Finish classification * Update * Fix * Update * Update * Update * Fix * Fix * Fix * Update * Update * Update * trigger CI * Fix CI * Update * Update * Update * Add default values * Rename * Update deprecation message
828a5e5b · Mufei Li · GitHub · e4948c5c · 828a5e5b · 828a5e5b
Unverified Commit 828a5e5b authored Feb 04, 2020 by Mufei Li Committed by GitHub Feb 04, 2020
20 changed files
--- a/apps/life_sci/dgllife/model/readout/weighted_sum_and_max.py
+++ b/apps/life_sci/dgllife/model/readout/weighted_sum_and_max.py
--- a/apps/life_sci/dgllife/utils/__init__.py
+++ b/apps/life_sci/dgllife/utils/__init__.py
+"""Utils for data processing."""
+from .complex_to_graph import *
+from .early_stop import *
+from .eval import *
+from .featurizers import *
+from .mol_to_graph import *
+from .rdkit_utils import *
+from .splitters import *
--- a/apps/life_sci/dgllife/utils/complex_to_graph.py
+++ b/apps/life_sci/dgllife/utils/complex_to_graph.py
--- a/apps/life_sci/dgllife/utils/early_stop.py
+++ b/apps/life_sci/dgllife/utils/early_stop.py
--- a/apps/life_sci/dgllife/utils/eval.py
+++ b/apps/life_sci/dgllife/utils/eval.py
--- a/apps/life_sci/dgllife/utils/featurizers.py
+++ b/apps/life_sci/dgllife/utils/featurizers.py
--- a/apps/life_sci/dgllife/utils/mol_to_graph.py
+++ b/apps/life_sci/dgllife/utils/mol_to_graph.py
--- a/apps/life_sci/dgllife/utils/rdkit_utils.py
+++ b/apps/life_sci/dgllife/utils/rdkit_utils.py
--- a/apps/life_sci/dgllife/utils/splitters.py
+++ b/apps/life_sci/dgllife/utils/splitters.py
--- a/apps/life_sci/examples/binding_affinity_prediction/README.md
+++ b/apps/life_sci/examples/binding_affinity_prediction/README.md
--- a/apps/life_sci/examples/binding_affinity_prediction/configure.py
+++ b/apps/life_sci/examples/binding_affinity_prediction/configure.py
--- a/apps/life_sci/examples/binding_affinity_prediction/main.py
+++ b/apps/life_sci/examples/binding_affinity_prediction/main.py
--- a/apps/life_sci/examples/binding_affinity_prediction/utils.py
+++ b/apps/life_sci/examples/binding_affinity_prediction/utils.py
--- a/apps/life_sci/examples/generative_models/dgmg/README.md
+++ b/apps/life_sci/examples/generative_models/dgmg/README.md
--- a/apps/life_sci/examples/generative_models/dgmg/eval.py
+++ b/apps/life_sci/examples/generative_models/dgmg/eval.py
--- a/apps/life_sci/examples/generative_models/dgmg/sascorer.py
+++ b/apps/life_sci/examples/generative_models/dgmg/sascorer.py
--- a/apps/life_sci/examples/generative_models/dgmg/train.py
+++ b/apps/life_sci/examples/generative_models/dgmg/train.py
--- a/apps/life_sci/examples/generative_models/dgmg/utils.py
+++ b/apps/life_sci/examples/generative_models/dgmg/utils.py
--- a/apps/life_sci/examples/generative_models/jtnn/README.md
+++ b/apps/life_sci/examples/generative_models/jtnn/README.md
--- a/apps/life_sci/examples/generative_models/jtnn/jtnn/__init__.py
+++ b/apps/life_sci/examples/generative_models/jtnn/jtnn/__init__.py
+from .mol_tree import Vocab
+from .datautils import JTNNDataset, JTNNCollator
+from .chemutils import decode_stereo